Scaffold Water_100361

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Water_100361

Scaffold Water_100361

Overview

Basic Information
Taxon OID	3300002930 Open in IMG/M
Scaffold ID	Water_100361 Open in IMG/M
Source Dataset Name	Estuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	10093
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (53.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location Name	Pearl Estuary, Zhujiang, China
Coordinates	Lat. (^o)	22.67	Long. (^o)	113.71	Alt. (m)		Depth (m)	6
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001668	Metagenome / Metatranscriptome	654	Y
F024541	Metagenome / Metatranscriptome	205	N
F063638	Metagenome / Metatranscriptome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Water_10036111	F001668	GGA	MATVYLPVEPIEGMDSAQRADALDAEVWALLRPAALQLPQDTKYLYPRTVHPDTGQTAIIGDTTDDIYIHPDVDLTELLALLPEVPQEEKDGLVMFIDANRGGSVPFGQLIPSTSTQLTEEEARALGWIPDPIEP*
Water_1003612	F024541	GGA	MIISQYGSVHKCAAKLGTNREQLLRQIRTGNDQVLDAIADNCRLSRQEVRWEFRYHTENA
Water_1003618	F063638	GAG	MLDTLDTLTAVIDTVTTVVIVDPVILDPMEPWYVTHYVELIFIALAAAKAVLNLVPSEKPRVLFGYLDTLIGLIFKDRRK*

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