NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Water_100505

Scaffold Water_100505


Overview

Basic Information
Taxon OID3300002930 Open in IMG/M
Scaffold IDWater_100505 Open in IMG/M
Source Dataset NameEstuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8141
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location NamePearl Estuary, Zhujiang, China
CoordinatesLat. (o)22.67Long. (o)113.71Alt. (m)Depth (m)6
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058075Metagenome135N
F060821Metagenome132N

Sequences

Protein IDFamilyRBSSequence
Water_1005052F060821N/AMDRTALAGFGGSLASISGSFHEIIGIVAGGMTIIYMAVKIYQEVKKK*
Water_1005055F058075N/AMGNLKTELLTKLKGYAPYQQIVALYEDKAPFFKELHNYMIGGMVCSNPSYFMMCKAIDGSKDASDQWFCKTPDTWYIRWVAGTGCIKEMMEQLAPLPFLKFRRITPNGETSIRTYSWEKMYKKVSYEK*

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