Scaffold Water

Basic Information
Taxon OID	3300002930 Open in IMG/M
Scaffold ID	Water_100837 Open in IMG/M
Source Dataset Name	Estuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002930 Open in IMG/M

Scaffold ID

Water_100837 Open in IMG/M

Source Dataset Name

Estuary water microbial communities from Pearl Estuary, Zhujiang, China

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6079
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (90.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

6079

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (90.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location Name	Pearl Estuary, Zhujiang, China
Coordinates	Lat. (^o)	22.67	Long. (^o)	113.71	Alt. (m)	Depth (m)	6
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Pearl Estuary, Zhujiang, China

Coordinates

Lat. (^o)

22.67

Long. (^o)

113.71

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001059	Metagenome / Metatranscriptome	790	Y
F001915	Metagenome / Metatranscriptome	617	Y
F004695	Metagenome	427	Y
F006264	Metagenome / Metatranscriptome	377	Y
F015330	Metagenome / Metatranscriptome	255	Y
F103134	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Water_1008371	F004695	AGGA	MLDKQNIIVESLESPPANKGLEYQVAHEAYLKMVDYLRLTQAKNTLNRLSDYHYLNIPVSNSTEPIRGIDYISPVVSPGIDYSTDVITKCLMPDGKVNFEFERLSEFDAIASQQAEKMVTYFINSKNDSYQIVRDWAQDSLLHKNGVVMISPIREPITQYKEVEGTRDNLRSFEIMAAEKGLVAKRQQMRRIDVDLQGVAQETMMPDETGQPTEPSADEMQDAIKAHTIYRAKYKLTGFSTNIRIKHVAQHYFVCNPTIPGIQNQDFCGFYMPMTIHEAKSQYPYIDLEKFADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADRYSRVVMLTTAWLRKDVDNDGDEEIVEVCYSGSYVLYIKEVDFIPMASMCPKPIVGNFFGYSQAERLVPLQEYKTAINRAEIAFALQASTPRMGVNPEFIDAEEIQRGVSALFILDRKFDPTKHVFEFAPLQGNLGYIQDAMERFESDNNRMLGMTSAADTLNPEVMKDGNSGYKLQLAMGPNQIIQDAMVKNCAIGLRDMIYIVWKTMIQYSDDYNIHQLAEACGGKGRGWLDAKSMENYDFIDRKDIEIDLALGFMSEENRLTRQQLITQA
Water_10083710	F001915	AGGA	MEWSLADPRFDVDDIVEMADSFFGHEADGIVTRSRAVFRHRVTVACTEQLFNKSREFIAVCRDTPLVMLDDGNTNQPRLLGFCWFDRGGYTTYSNEEISNAKFHHLDLSLSVRNRVRLVNEMIDQHILWAHTWGVPIVCSTSIRSEHDGFMRIHAKRGFTVNGSYAWIRTKKGMECLTKK
Water_1008373	F006264	N/A	MEDFSAIFKQKLGGQAEVCARKSLEWLQKDLQGEFKLLPSEVYYLASAASILLNIRDTYGKK*
Water_1008374	F001059	AGGA	MATYDLEALKADLPTAKELAQFVYDKTQIALDLVGKSKDDQYQVAKNALEGKKVPIEFITAENPYVDKKDLIPVDELKVIPPRSKDLPDAESQVHYFGATNMPHPLDPQSDKKVAIDFRKYENGLITYQVVAPVEQIAVGSRINKYGQTVPEKYTWLDPRTEELVMRKPDGTFTERGRGLYTYLIGEKGGGVWTLIDRDMVSVSAKNIADPWA*
Water_1008376	F103134	GAGG	MYGRVIDGGKQMSKGLSKGINDKLSGFEEENERRAVVAGAVRQAFTVRHLSDQTTNNSNKGKFETIKEKAKVNP*
Water_1008379	F015330	AGGA	MSDEKVVAIKPKNPVGRPKSVVNRVTEYGALFNQLNEQHIAKGLPPLKTAMEVLIEAMQSDELDIKDKARIADKLAPFESSRAPVISIEHVQNIVREEEVSADDAMDDFLDSLRKV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Water_100837

Overview

Ecosystem & Geography

Associated Families

Sequences