NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Water_100889

Scaffold Water_100889


Overview

Basic Information
Taxon OID3300002930 Open in IMG/M
Scaffold IDWater_100889 Open in IMG/M
Source Dataset NameEstuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5931
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (88.24%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location NamePearl Estuary, Zhujiang, China
CoordinatesLat. (o)22.67Long. (o)113.71Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001059Metagenome / Metatranscriptome790Y
F001915Metagenome / Metatranscriptome617Y
F006264Metagenome / Metatranscriptome377Y
F040590Metagenome161Y

Sequences

Protein IDFamilyRBSSequence
Water_10088910F001915GGAGGMEWRLAHPLDDVEDIVELADTVFGAEADAILTRNRDVFRKHVTVAATVQLFDRGKEFLAVCRDVDRLVAYCWFDRGGYTTYANEEISNAKFHHVDLGLPAKTRVRLLNQMIDQHILWASNWGIPVICSTSIRTEHDGFMRIHKKRGFTVNGSYAWIKTQDGLKGIK*
Water_10088914F040590GAGGMSAYGKVISGGKAMTNGLTKGINKKLEAFSDSHKRSKLLANSVRDTFNQNPLSDPHLNNINVAASKKFTTPKLPTKV*
Water_10088915F001059AGGAMATYDIEALKEDLPTAKDLAQFVYDKTQIALDLIGKPKEDQYQVAKNALEGRKIPSEYVTDVNPYIDRKELIPEDELAALPERPTDLPDIDSQIHYFGATNMPHPSNPQSDEKVAIDFRKYDNGTVTFQIVGPVYQMAVGERLNKFGQRVPEKYTWNDPRTPETLMKRPDGTFTERGRKLFQYCSGEKGGGIWSLIDRELTSISSKNIVDPWA*
Water_10088916F006264N/AMEDQSSVFRQKLSAQAEVCARKTLEWLQKDLQGDRTLAPQDVYYLSSAADLLLAMRDLYGKK*
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