NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Water_100936

Scaffold Water_100936


Overview

Basic Information
Taxon OID3300002930 Open in IMG/M
Scaffold IDWater_100936 Open in IMG/M
Source Dataset NameEstuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5755
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (54.55%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location NamePearl Estuary, Zhujiang, China
CoordinatesLat. (o)22.67Long. (o)113.71Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001668Metagenome / Metatranscriptome654Y
F024541Metagenome / Metatranscriptome205N
F063638Metagenome / Metatranscriptome129N

Sequences

Protein IDFamilyRBSSequence
Water_1009362F024541N/AMEFFDMIISQYGSVHRCAEKLGTNREQLLRQIRTGNDQVLEAIADNCRLSRQEVRWEFRYHNENA*
Water_1009366F063638GAGMIDTLDTLTAVIDTVATVVVLDPVILDPMEPWYVTHYVELIFIVLAAAKAVLNLVPSEKPLVIFGYIDTLIGLIFKDRRK*
Water_1009369F001668N/AMATVYLPVEATIPGMTSKQRAYAINAEVWALLRPASLQLPQDTKYKYGQITHPETGQEAIIGDTTEEIYINPLVDLTELLELLPEVPQEEKDGLVMFIDANRGGTVAFGQLIPSTSEQLTQEEAEALGWLPDPIEP*
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