NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Water_101115

Scaffold Water_101115


Overview

Basic Information
Taxon OID3300002930 Open in IMG/M
Scaffold IDWater_101115 Open in IMG/M
Source Dataset NameEstuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5185
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (61.54%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location NamePearl Estuary, Zhujiang, China
CoordinatesLat. (o)22.67Long. (o)113.71Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002594Metagenome / Metatranscriptome545Y
F004220Metagenome448Y
F011527Metagenome290Y
F019560Metagenome229Y
F024421Metagenome206Y
F043623Metagenome156N

Sequences

Protein IDFamilyRBSSequence
Water_10111511F004220GGAMVEKDKLDWAYYFKSLLGGSTAPGWIRVCSKDMNEGFSVFTKQTRVKEHYKKIADTGVEFYTCDDDDLDKEYGMYYGNLDFDPLEIMAFRSGHTKMFYKENGKWKPV*
Water_10111512F043623AGGMFKRIKKTEDDPSLKEAQTFVKGWVERVVLSTGVLLVDEEALLKQGIKKNKAASFLANKDGYSEILGPAIFIPHEIKSEWY*
Water_1011152F019560AGGAGMQKVKIKFSIITPCEKEYEIVDQDLWDFGKDRFTEIAKSDNCQEIFSDERIYGLKPIENSFYEDSPNREVHKVENVVIDGKNVWY*
Water_1011155F011527N/AMLVYFQFRRCGYYARGLVEADSLDAASRALWAEHVGTFKWEDQTNDMPENANYLTIEEYKYERSSDGKTEPENETRSQVG*
Water_1011156F024421AGGAGMSEALMEKLNQKMKLEAKWASELLSNGAVTVEMVNISKEVKTVEREIKEVVEHQ*
Water_1011157F002594N/AMAKIPISRLNSAPEKYQQNEFNQLIEDLQDMVKILNSTYPKDQNDETERKNWFFMRGTG*
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