Scaffold Water_101755

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Water_101755

Scaffold Water_101755

Overview

Basic Information
Taxon OID	3300002930 Open in IMG/M
Scaffold ID	Water_101755 Open in IMG/M
Source Dataset Name	Estuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3942
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location Name	Pearl Estuary, Zhujiang, China
Coordinates	Lat. (^o)	22.67	Long. (^o)	113.71	Alt. (m)		Depth (m)	6
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001279	Metagenome	732	Y
F026267	Metagenome	198	N

Sequences

Protein ID	Family	RBS	Sequence
Water_1017556	F026267	GAG	MKVKLELDLQDGRGARTMTTNMFVVCEWEKTENRKVSDGKGIGYSDLACWAYHLCKLAGDPVPETWREWVKQHPDMELTSIDETNPNPTALAPTDTN*
Water_1017557	F001279	GAGG	MSVSTTITVVGVKDTINALRKIDPQLQKDFRAQANEIAAPAIKAAQDMYTALPLSGMKYNWTSPGRDRKNFPFSVAKAKSGVKLRIDTRRGAVGVILIEQKDPAAAIFETAGRANANKLGDALGFVGAGRTRLIGPAVYRARRAIEEPMKKMILDTARVVRQEL*

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