NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Water_102173

Scaffold Water_102173


Overview

Basic Information
Taxon OID3300002930 Open in IMG/M
Scaffold IDWater_102173 Open in IMG/M
Source Dataset NameEstuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3435
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (45.45%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location NamePearl Estuary, Zhujiang, China
CoordinatesLat. (o)22.67Long. (o)113.71Alt. (m)Depth (m)6
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025148Metagenome / Metatranscriptome203N
F050340Metagenome / Metatranscriptome145Y
F053650Metagenome / Metatranscriptome141N
F062719Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Water_1021733F062719N/AMTKQEILNHPIWTSRLIFNAKLLFGKPWKDCDEDEQLAVRLRSLGIDKNEIQ*
Water_1021735F050340GAGMKHEEFDKMMGHAMDHVKELVETAKEIKRNRIIALNQRDLKENGIEND*
Water_1021737F053650AGGMKKLIRKRRHMAFVRRYIVELQWDSLNTMLVASKTQWNDDVVKALDNNARLIRKYERRRRWLRF*
Water_1021739F025148N/AMANVDFAKGHGTILSGSVKYARLTNESGPDQMSEKYGCELHLDDASAKQLTDLKVLDHVRSKDPQGNFKYENPVVRVKSINIPKGYLANRQIFDGLIGDESEIRANVWIKKWEYNGKKGLSVWLSAYVITNLVEYKTNDSDALFEGLPDVGELVPGQESVPTSKPNVASQADAFGDADGDDLPF*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.