Scaffold Water_103329

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Water_103329

Scaffold Water_103329

Overview

Basic Information
Taxon OID	3300002930 Open in IMG/M
Scaffold ID	Water_103329 Open in IMG/M
Source Dataset Name	Estuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2646
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (55.56%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location Name	Pearl Estuary, Zhujiang, China
Coordinates	Lat. (^o)	22.67	Long. (^o)	113.71	Alt. (m)		Depth (m)	6
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017467	Metagenome	240	Y
F065407	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Water_1033293	F065407	AGGAG	MFTFDEQYKKYEELAERTKQAYEFWYKCVLSTMKDFYKFGK*
Water_1033298	F017467	AGAAG	LKNNSDNYLVEWYIAVAKKRGWPAVVKLLAQYPEKEERIKMMIKKRLGK*

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