Scaffold Water_104465

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Water_104465

Scaffold Water_104465

Overview

Basic Information
Taxon OID	3300002930 Open in IMG/M
Scaffold ID	Water_104465 Open in IMG/M
Source Dataset Name	Estuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2180
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location Name	Pearl Estuary, Zhujiang, China
Coordinates	Lat. (^o)	22.67	Long. (^o)	113.71	Alt. (m)		Depth (m)	6
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011142	Metagenome / Metatranscriptome	294	Y
F059759	Metagenome / Metatranscriptome	133	Y
F102815	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Water_1044651	F011142	N/A	KVAGKVNKVFGASSQGLSLVESYKSASGEDYTRSYTVWFAVAHNVPEGAEVTVYGQLSTKIEDYEDRNGQAARKVKLDINNAQIDAPVAPVAVSNAPF*
Water_1044655	F059759	AGGTGG	MSKEQVWALLEIYRQMQVANTIIQYNDAFEELHLFIEENCLKVGA*
Water_1044656	F102815	AGG	MRNPEELFLEAINAYRAWIDCGKDFLNHSDLYDVWDDAVMAYAQVVHLQRNRAVHQILQGLEIVR*

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