Scaffold Water_104857

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Water_104857

Scaffold Water_104857

Overview

Basic Information
Taxon OID	3300002930 Open in IMG/M
Scaffold ID	Water_104857 Open in IMG/M
Source Dataset Name	Estuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2067
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location Name	Pearl Estuary, Zhujiang, China
Coordinates	Lat. (^o)	22.67	Long. (^o)	113.71	Alt. (m)		Depth (m)	6
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002281	Metagenome / Metatranscriptome	575	Y
F053386	Metagenome	141	N
F075435	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Water_1048572	F053386	AGGAG	MYKETINDHMTAVGDTSSMFIVIEYNNPTYPETTVYNIAHGADLRLGNGKPNMLSDVMDGTTLVTYDNLKDAQKMCQRLNYGYESTKRLIETGSIV*
Water_1048575	F002281	N/A	MKFNYPKIAEHLGVPLRGNETFTELLEIEKQVKEHKERQERIAEENANIQRIDAQTKKYWGK*
Water_1048577	F075435	GGA	MKTFTVIGRVWTRDHGYLATRCSMNFEAKNKTRAIKMARELRNAGKNFISCNNFVAYPTDCPEENPLAMSWEERQMERDYWKQEERYSDDPPIVPQGYYD*

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