NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI11641J44799_10022525

Scaffold JGI11641J44799_10022525


Overview

Basic Information
Taxon OID3300002961 Open in IMG/M
Scaffold IDJGI11641J44799_10022525 Open in IMG/M
Source Dataset NameWetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site A1 Bulk
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1882
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland → Wetland Microbial Communities From Twitchell Island In The Sacramento Delta

Source Dataset Sampling Location
Location NameTwitchell Island in the Sacramento/San Joaquin Delta, CA
CoordinatesLat. (o)38.107057Long. (o)-121.647578Alt. (m)Depth (m)0 to .12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068995Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
JGI11641J44799_100225252F068995AGGAGGMKAEKKIKFVKAIHPSQPEWEYYLPKEDKALIKKLSKKPIFPKLCDRPCTSIITLFPKDTVGGHTGKGYYMVNIDGYRMINAYVISDPLNSTNQRGFTLELSFALNDFVYGVGVVGETSYFFNFDSYFEPGTVSHKLQRCETNDLSTTGGLPLIGGVDLTHILRIPVMGPYVRASVFNEDGIAKKAEVKAYLTT*
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