NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0052161_10028

Scaffold Ga0052161_10028


Overview

Basic Information
Taxon OID3300003081 Open in IMG/M
Scaffold IDGa0052161_10028 Open in IMG/M
Source Dataset NameAcid Mine Drainage microbial communities from Carnoules, Gard, France, bin 4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)247036
Total Scaffold Genes244 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)165 (67.62%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Acid Mine Drainage → Acid Mine Drainage Microbial Communities From Carnoules, Gard, France

Source Dataset Sampling Location
Location NameCarnoules, Gard, France
CoordinatesLat. (o)43.303Long. (o)6.188Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F095037Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0052161_10028240F095037AGGMIELHERTRRISPTRIHEILLRYGAKSLVDPFMGLPTHLNYLKRHGIAVHGGDVLEWFVRVGEGIVVNDLTILRDHEVAEIVEMIPGRIYALDLFKAWEGVFFTEEQCVYLGVWFDNVRNLRSDGQTGLAILGLWRVFCYWLQKAQEPDEMPDLPPSELAWHYIRQTERWVASNMRRNTVRQCDVMHTLERQHADALLFAPPPRNALHHADPRIWMWEAWWQGNPYFTLEHAYRDTLFGARSNDPAAYHRSIAGIISEAGEYPLLIVATNELRLGEIEPIVRNARAKVECYAPNDSEIYLIATA*
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