Scaffold Ga0051081_1007873

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0051081_1007873

Scaffold Ga0051081_1007873

Overview

Basic Information
Taxon OID	3300003140 Open in IMG/M
Scaffold ID	Ga0051081_1007873 Open in IMG/M
Source Dataset Name	Human fecal microbial communities from Washington University at St. Louis, Missouri, USA, of twins - TS29
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Washington University in St. Louis
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3762
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Huma Fecal → Human Fecal Microbial Communities From Washington University At St. Louis, Missouri, Usa, Of Twins

Source Dataset Sampling Location
Location Name	Washington University at St. Louis, Missouri, USA
Coordinates	Lat. (^o)	38.63549	Long. (^o)	-90.264891	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F078822	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0051081_10078731	F078822	N/A	NAFLKAFHLHAVRFPAAFLLVHRFYLAFEELLSCATAYL*

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