Scaffold Ga0052242_1002951

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0052242_1002951

Scaffold Ga0052242_1002951

Overview

Basic Information
Taxon OID	3300003142 Open in IMG/M
Scaffold ID	Ga0052242_1002951 Open in IMG/M
Source Dataset Name	Marine sediment microbial communities from deep subseafloor - Sample from 5.1 mbsf
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Japan Agency for Marine-Earth Science and Technology
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1248
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Sediment → Marine Sediment Microbial Communities From Deep Subseafloor

Source Dataset Sampling Location
Location Name	Northwestern Pacific Ocean
Coordinates	Lat. (^o)	41.1773	Long. (^o)	142.2013	Alt. (m)		Depth (m)	1180.5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F094580	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0052242_10029512	F094580	AGGAG	MGTKLHLTLDDAYGRTTHRVYGMEEVTTLAQMQTDAAEFLAALEAVSDLGCVKASISFDVTSPEYAETAGANVDVGATASGWIVAGQKKASMKIPSIKPASVETDGSVEIAGVVATFLALFEDADVFNLSDGEQIDTWIRAGLDR*

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