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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300003142 Open in IMG/M |
| Scaffold ID | Ga0052242_1022596 Open in IMG/M |
| Source Dataset Name | Marine sediment microbial communities from deep subseafloor - Sample from 5.1 mbsf |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Japan Agency for Marine-Earth Science and Technology |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 865 |
| Total Scaffold Genes | 2 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Novel Protein Genes | 1 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 1 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Sediment → Marine Sediment Microbial Communities From Deep Subseafloor |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Northwestern Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 41.1773 | Long. (o) | 142.2013 | Alt. (m) | Depth (m) | 1180.5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F087951 | Metagenome | 110 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0052242_10225962 | F087951 | N/A | MSDNDILMDKELFLEKFEKMSLKIEQLSSEISKMKEKLDKTNKYNRSFGLEAIRNSKPLSFAKEIHGIKSPTKRYIMSIRTVSELWKGRKNDFLIAIRQQEKETQLDIKALGIRIPVNDIKNLTTLTKEVLSMLYVSSELKGLEITEILREIISQINKNG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |