Scaffold Ga0051080_1009846

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0051080_1009846

Scaffold Ga0051080_1009846

Overview

Basic Information
Taxon OID	3300003146 Open in IMG/M
Scaffold ID	Ga0051080_1009846 Open in IMG/M
Source Dataset Name	Human fecal microbial communities from Washington University at St. Louis, Missouri, USA, of twins - TS28
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Washington University in St. Louis
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	16127
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (61.11%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Huma Fecal → Human Fecal Microbial Communities From Washington University At St. Louis, Missouri, Usa, Of Twins

Source Dataset Sampling Location
Location Name	Washington University at St. Louis, Missouri, USA
Coordinates	Lat. (^o)	38.63549	Long. (^o)	-90.264891	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F052660	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0051080_100984610	F052660	AGGA	MCILRVLPENTPEKIGQEWAGTEWTVVKSKIRLCIRNRSYGQFLHGGILMGIALPIPSHRAKSHDFACWWPATAGHSRSADALPGKSNF*

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