NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0052235_1011699

Scaffold Ga0052235_1011699


Overview

Basic Information
Taxon OID3300003147 Open in IMG/M
Scaffold IDGa0052235_1011699 Open in IMG/M
Source Dataset NamePlanktonic microbial communities from North Pacific Subtropical Gyre
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1167
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Planktonic Communities From Hawaii Ocean Times Series Station (Hot/Aloha)

Source Dataset Sampling Location
Location NameNorth Pacific Subtropical Gyre, Hawaii
CoordinatesLat. (o)22.887959Long. (o)-158.027466Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003270Metagenome496Y
F008596Metagenome331N

Sequences

Protein IDFamilyRBSSequence
Ga0052235_10116991F008596AGGAMSGAWDIATATSIGTGVAKTQINGGNNVTKPTQAVNLVEVVPYISSSGAMTVAQSLAVTLEIDSFSVDLLPKRIIVPPIQSGKGTIGNTVNPILEAYECNTGLQEGATSQFIISGQSQIAPTVATNLACALHYSTTPPNRPEHFYHKPDDETVFTTATTTTGDSFTINDGMWVEDLYVSVFTAVYTESQSLTGYGSFSSNDFGNSLPLKVPMQPGAASLGAVGTQGIMN*
Ga0052235_10116992F003270N/ARGLDYLGKLKVAANILTGSLTGRVAFSDQYNPSPSGQPRINPAGIINKWVGIGLAAKIYGKVGKAMKLPEQASIDRIGSKLIFGGAIGGFFDPPSPAGRITTYAVSPNVRTQNIAQTRRTYTRRMSNVGYTPPDSFDYSTGSAFR*
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