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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300003147 Open in IMG/M |
| Scaffold ID | Ga0052235_1045696 Open in IMG/M |
| Source Dataset Name | Planktonic microbial communities from North Pacific Subtropical Gyre |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1441 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Novel Protein Genes | 1 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
| Associated Families | 1 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Planktonic Communities From Hawaii Ocean Times Series Station (Hot/Aloha) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | North Pacific Subtropical Gyre, Hawaii | |||||||
| Coordinates | Lat. (o) | 22.887959 | Long. (o) | -158.027466 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001493 | Metagenome | 683 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0052235_10456962 | F001493 | GAGG | MAKSVVQGVHLTDFDGVGKLKRLQGKKKSISAFYNIKDYILSSGIKTEGGYVVELEGDILAASPDDISSQPDKSGRRWLTFSSLMNPSTASDPGLGGKSKLRGIEKDIESMMWEIIKTHSDYPKSMLDLSINAAWIELRSERELYKKVMGLIIKDYIDGMEKIMKKYSKSLRSVLTDYTKKRTLDPDPDSGDVAMWDELVVNNFKIQKIHVSPEFSPDFDGDDDIDGFPFELYDDTGDMADYITRTVQRIKL* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |