NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0052262_1108441

Scaffold Ga0052262_1108441


Overview

Basic Information
Taxon OID3300003148 Open in IMG/M
Scaffold IDGa0052262_1108441 Open in IMG/M
Source Dataset NameAlgal bloom microbial communities from Baltimore Inner Harbor, Chesapeake Bay
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Maryland
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1226
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Marine → Marine Microbial Communities Of A Harmful Algal Bloom From Baltimore Inner Harbor

Source Dataset Sampling Location
Location NameBaltimore Inner Harbour, Chesapeake Bay, Maryland, USA
CoordinatesLat. (o)39.283Long. (o)-76.611Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058650Metatranscriptome134N

Sequences

Protein IDFamilyRBSSequence
Ga0052262_11084411F058650GAGMAGGAAALVILLGLGLASGLQVLDSEDPEGSPSTFEAKVEDPKLWTATGPAAGDPKLQGLYGKRFQIHRPGDFSLLSVPNAKKKHGNLLEIGAEVKEMEIGDPCLLFIKKITVSGSWLGGETLKVHAPGVGADFALRVDAKKHEGAWRPFKNMTGWEEVLHKDEGSGMITSVKGVIGRREGHAEDIKGPFEHRFLIRVAKESQKDKRFTIDVSLPKPGRQFLCVKVEHAKGLGSEFNKNIEGLLGLESRALEHPALAVRDECKDSATPTKATELLALSGGLSRASAHWE*
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