NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0052234_1041508

Scaffold Ga0052234_1041508


Overview

Basic Information
Taxon OID3300003149 Open in IMG/M
Scaffold IDGa0052234_1041508 Open in IMG/M
Source Dataset NameMarine microbial communities from Baltimore Inner Harbor, Chesapeake Bay - harmful algal bloom
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Maryland
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)623
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Marine → Marine Microbial Communities Of A Harmful Algal Bloom From Baltimore Inner Harbor

Source Dataset Sampling Location
Location NameBaltimore Inner Harbour, Chesapeake Bay
CoordinatesLat. (o)39.283Long. (o)-76.611Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004698Metagenome / Metatranscriptome427Y

Sequences

Protein IDFamilyRBSSequence
Ga0052234_10415081F004698N/ALKCSVLPTSPLVPPKMQLKLLAATLALAGAAKLRTAPDVATRVAEEQQENIQIHDGFLSQEQKDVEQEKKVKSDKDLSALQVVHGGSWVTALDRDLKTQMLVQVKSFNHKDPCSTIECTGNLKCPAGFAVTEVPGHCCPYCVNPDIKVEAAITGATGSHGGKPSTFCDDVYCFPTMCDTTETAATTTNGQCCPVCN*
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Institute for Fundamental Biomedical Research
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