NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0052254_1137728

Scaffold Ga0052254_1137728


Overview

Basic Information
Taxon OID3300003152 Open in IMG/M
Scaffold IDGa0052254_1137728 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities from Loktak Lake, India
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterNational Environmental Engineering Research Institute, India
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1106
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Sediment → Sediment → Sediment Microbial Communities From Loktak Lake India

Source Dataset Sampling Location
Location NameILoktak Lake, Imphal, India
CoordinatesLat. (o)24.562571Long. (o)93.815303Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052631Metagenome142Y
F062496Metagenome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0052254_11377281F052631N/AQQFLAIFLGISILRNMKRRLHNTAAKQRAIAVLARMRSRGESLSEAARHERTTPRTVRRILPKQLRRGSSGRYVASRGDRLQREISVLSFDGYVHVVVRSSKQAQLASAHLIAINRYLRTGDERWLKPFIGKHVGGVELLTDPDRLQILADAGLVKLDALYRNNPGGGHEK*
Ga0052254_11377282F062496GGCGGMRNSSSRLRDLAIYGTGPRKEVNMDLIRKPENGNASTDYNPWLTPEVLGKSGKGTVNLLGTMRASNSQFGEGIILDVKVNGSKFSWTVKYASGNYSRLHKKFGDAEKEWKGPIKVEVKEYMGKEYVAVV*
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