NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25406J46586_10007072

Scaffold JGI25406J46586_10007072


Overview

Basic Information
Taxon OID3300003203 Open in IMG/M
Scaffold IDJGI25406J46586_10007072 Open in IMG/M
Source Dataset NameTabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5144
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico

Source Dataset Sampling Location
Location NameUniversity of Puerto Rico, San Juan, Puerto Rico
CoordinatesLat. (o)18.402889Long. (o)-66.050054Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008638Metagenome / Metatranscriptome330Y
F057407Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
JGI25406J46586_100070724F057407AGGAGGMSTSAQRVRVLGLLFASLLVAMALMDASLARATQIAGAGRLATGGKVRVVIAGTNDRYPVTDGSLAGKGTFKASGAITDNGLALGYRTVKGDSDSADGALITLRFVTKGKKGTVTFVVKIDTKAGTSRWTIASGTRAYKGLHGNGTESENATFTVSTLRGTVSR*
JGI25406J46586_100070725F008638AGGAGMARTIKRRPGLALLILALALVAGATAEPTRANGVTPGQLTEAGWTCIQPRVDPTLLLCAPPGVGLPPLPGTLGFADRAPSYEFMVFEFATGALLGTNHLLRPDIYERGKPPCPRQPGGEYIYNPRNDLWSCLRTR*

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