NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25406J46586_10074756

Scaffold JGI25406J46586_10074756


Overview

Basic Information
Taxon OID3300003203 Open in IMG/M
Scaffold IDJGI25406J46586_10074756 Open in IMG/M
Source Dataset NameTabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1053
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico

Source Dataset Sampling Location
Location NameUniversity of Puerto Rico, San Juan, Puerto Rico
CoordinatesLat. (o)18.402889Long. (o)-66.050054Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001844Metagenome / Metatranscriptome627Y

Sequences

Protein IDFamilyRBSSequence
JGI25406J46586_100747561F001844N/ADLTQQYTATYSKSSSVESRLWHAVFDLVKAFTAAYQLALKVGYPHAENKRWRAVLPWVLVRLAHYKGIDGKFRLFRYGQWIPAQWRELHELYEFARMRGWQREQLVFGSAPFSRPGVCVEQEYLQTLLLMRLDSGNFTPDQVEWVSRQLEDWAPTLALIPPPGSGATFYVDLTGTTGLRRLDRPHAGGRILFLDAGPVYQRVVERMRWLPEQDDDAAKPGEMPAREQRLLLMRLASLFGPDSLAMAPRAPRYATDTEVRVVVGLQTLCRAVAEIPRLPESARTPAVQTSYDEITQVVSTAVNPESVGRKVRGATWRMSDRSGTGARLVAPSGEAPNRLGEILAIKEDETW
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