Scaffold JGI25153J46596_10000740

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI25153J46596_10000740

Scaffold JGI25153J46596_10000740

Overview

Basic Information
Taxon OID	3300003215 Open in IMG/M
Scaffold ID	JGI25153J46596_10000740 Open in IMG/M
Source Dataset Name	Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	20002
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (82.61%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere → Arabidopsis, Maize, Boechera And Miscanthus Rhizosphere Microbial Communities From Different Us Locations

Source Dataset Sampling Location
Location Name	University of North Carolina, USA
Coordinates	Lat. (^o)	35.9082	Long. (^o)	-79.0499	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002851	Metagenome / Metatranscriptome	526	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25153J46596_1000074022	F002851	AGGAG	MRSLIETAAVIAACGSAIFWFMSAMCRLPDAKPGFDEEQVAELSKALRKMNRRNFWAAGLMGVTALLSASGRFIGFFGL*

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