Scaffold JGI26079J46598_1001564

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI26079J46598_1001564

Scaffold JGI26079J46598_1001564

Overview

Basic Information
Taxon OID	3300003216 Open in IMG/M
Scaffold ID	JGI26079J46598_1001564 Open in IMG/M
Source Dataset Name	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_59LU_5_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	9033
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (19.05%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	Saanich Inlet, British Columbia, Canada
Coordinates	Lat. (^o)	48.6	Long. (^o)	-123.5	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F026279	Metagenome / Metatranscriptome	198	Y
F051135	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26079J46598_100156411	F026279	N/A	MKNVYVRAVERYTVWEATQPIEVNVEKLRQCEPPFEGETEQDLLEYLKDNVWNNEDWADENGEIYGNDAAFDLTFMEAYDKEVYSDSRDKYEQSWLDVGVPNDEYRKMGGFEVKATNVDEA*
JGI26079J46598_100156416	F051135	N/A	MTIKDYKTFLNSLPEEFDNFEITHREYTDITDNELNAQEVNVYSVHIDESQQKACNMHQQSYELYQEFVNNATK*

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