NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI26079J46598_1002206

Scaffold JGI26079J46598_1002206


Overview

Basic Information
Taxon OID3300003216 Open in IMG/M
Scaffold IDJGI26079J46598_1002206 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_59LU_5_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7546
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (95.45%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001588Metagenome / Metatranscriptome667Y
F040050Metagenome / Metatranscriptome162Y
F041087Metagenome / Metatranscriptome160Y
F103012Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
JGI26079J46598_100220613F001588GAGGMQTTTQTNNYVFLAAEDAAIVVRVNNVTVAADVQTADALVQVFLTHNINVLTDTIMCSSSIDFAAEEGFATDSCAHNIIDAALDALE*
JGI26079J46598_100220619F041087AGGAGGMAVDLWDKVCEQIEHDVRDPLNDMTALYTMLQQVPKDVLIAYLPESELDDDYV*
JGI26079J46598_10022068F040050GAGGMNDLFEIVEDLEDIDTFGSDTTAFEDIIVKWKARLLDAQDAAERQFELFEMDDGA*
JGI26079J46598_10022069F103012GGAGMETILIALCIAICGGLIGYLFGYRTGSNDIEQVYKDVYDIKDY*
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