NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI26079J46598_1026852

Scaffold JGI26079J46598_1026852


Overview

Basic Information
Taxon OID3300003216 Open in IMG/M
Scaffold IDJGI26079J46598_1026852 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_59LU_5_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1367
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038091Metagenome166N
F050682Metagenome / Metatranscriptome145N
F101904Metagenome102N

Sequences

Protein IDFamilyRBSSequence
JGI26079J46598_10268522F038091N/AMQNITSTNTLVVTNPIMSPLFTAQLITAASYNKLSAQTKADISVVAYSAAAYKKAMRTSVTAQANVNVVYNVTKNLSYSIAV*
JGI26079J46598_10268523F050682AGGMQNTKYTNTVIATIENFAALIQNAAHDSVVEKNDYSILDNVQALQYVYANYAQHTSVASLASAALSSNLDTVVRENIHAQLTFIN*
JGI26079J46598_10268524F101904N/AMQNLQVHYTYKTQNAVVADLCIVQSKTKRFTKTQQLNTQLKLAKQLNLKHFYAVTLTHYSVC*
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