NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI26079J46598_1039418

Scaffold JGI26079J46598_1039418


Overview

Basic Information
Taxon OID3300003216 Open in IMG/M
Scaffold IDJGI26079J46598_1039418 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_59LU_5_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1016
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007119Metagenome / Metatranscriptome357Y
F031527Metagenome / Metatranscriptome182Y
F051178Metagenome / Metatranscriptome144N
F056902Metagenome / Metatranscriptome137N

Sequences

Protein IDFamilyRBSSequence
JGI26079J46598_10394181F056902N/AMDSYLKWIATGFLMIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREA
JGI26079J46598_10394182F007119GAGMAKFQVLKNKKVLKEFDNAMDTALFATNNEYGPDMDIYTNDKQASETWTHFEYKESL*
JGI26079J46598_10394183F051178GAGGMKKGKCTVCKKVFTVKKGESLIGKLGIIPVDLCKTHLKKVLSYDEMNLNDTRANG*
JGI26079J46598_10394185F031527N/AVYEYMTVFFAILGTLAMVSAVGAVEEDQWLLGASAVCVGIASFIMTLFSQQLYSEAK*
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