NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold JGI26339J46600_10006490

Scaffold JGI26339J46600_10006490


Overview

Basic Information
Taxon OID3300003218 Open in IMG/M
Scaffold IDJGI26339J46600_10006490 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3428
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003859Metagenome464Y
F004817Metagenome422Y
F007120Metagenome357Y
F015428Metagenome254Y

Sequences

Protein IDFamilyRBSSequence
JGI26339J46600_100064902F004817AGGAMPKTVAIVQLPEILRKRSSHLVKLAGKIDSFSLLLQETPEGELKRSIECQFHTMVFATRKEIRKYCPRYRSLPGEGILDFNTDCASGQLEPGDIGTAPPPKRGKLCETCCFFVGIPEERSSEMTMSMAPQDLVLVV*
JGI26339J46600_100064903F003859AGGAGMDKPNAEYTNIPGHSWPGTNVYKSLKLGWQWRRLRWAVVAASEAAQGHEANGLPPGSREFKTLFTEVAAKIQEYSNASGEPLDALKARLPAFCALERLANPAATAPRNKAGLTLGVLILALLAPIGIGALIGLGTGMAHWIAHLFG*
JGI26339J46600_100064904F015428AGGAGGMSGILEVFLLLKAGSGIGFLVTWRNRLLASKVNYFHPPHNRKSPIDKLVRGQTGPVVTRQDQLFVKLADGLTTLVRRLVMLDAFRQLMRALALPGSPLRRKLSRRKRP*
JGI26339J46600_100064907F007120AGGAGGMKTIIIILSAACAVVAYYFGLRYFTGQDLGFTPARKYVRNLAENLLHTELTAAREACATPNTTTEQAASL*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.