NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI26343J46809_1001486

Scaffold JGI26343J46809_1001486


Overview

Basic Information
Taxon OID3300003223 Open in IMG/M
Scaffold IDJGI26343J46809_1001486 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1632
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026108Metagenome / Metatranscriptome199Y
F044033Metagenome / Metatranscriptome155Y

Sequences

Protein IDFamilyRBSSequence
JGI26343J46809_10014861F026108N/ALQAGFLYKRYQAQKDNPDLAALLDQVRITPGGDRVTLHMSLNDDQMSSLIKHNTFSFKM*
JGI26343J46809_10014862F044033GGAMFHSRAITVSVDFRRIELQIDPDARLAAAPGGAARFLAEAAGLTSEEAAELQKSVVAACQETFEHLIGDHPHLTVTLVRYPDRIEVELTHEGGARPAVGLDRIAGFATQIGVSGGIGGVDRVQYEVRGALSVTRLTKYLGHLPPIQ*

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