NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI26117J46588_1010057

Scaffold JGI26117J46588_1010057


Overview

Basic Information
Taxon OID3300003263 Open in IMG/M
Scaffold IDJGI26117J46588_1010057 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_48_BLW_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)856
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameMonterey Bay, California, USA
CoordinatesLat. (o)36.25Long. (o)-122.2099Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056582Metagenome / Metatranscriptome137Y
F057337Metagenome / Metatranscriptome136N

Sequences

Protein IDFamilyRBSSequence
JGI26117J46588_10100571F056582GGAMARYKTYKIEKTPTDKFTEMVTISKKIKGEIVERKFIDEDKAKAWIENGAAFKLINNGAKKVKNELGSIGIISEPAW*
JGI26117J46588_10100572F057337N/AMTYSELSKLSIEELRNLNSMVIETIKSKKSXXALEXKDSLYVGAXVSVDHPKMAGHELKVTKINRTKAVCELINGMGSYNVPLNMINIING*

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