Basic Information | |
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Taxon OID | 3300003268 Open in IMG/M |
Scaffold ID | JGI26115J46592_1000056 Open in IMG/M |
Source Dataset Name | Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_07_M0_10 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 28286 |
Total Scaffold Genes | 38 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (23.68%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing |
Source Dataset Sampling Location | ||||||||
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Location Name | Monterey Bay, California, USA | |||||||
Coordinates | Lat. (o) | 36.25 | Long. (o) | -122.2099 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F007366 | Metagenome | 352 | N |
F023580 | Metagenome | 209 | N |
F026567 | Metagenome | 197 | N |
Protein ID | Family | RBS | Sequence |
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JGI26115J46592_100005613 | F007366 | N/A | MRGTPLKETKLGKWFKEKSPKVFSLIAEVVPGADVLHTISALIDSTDTSAEEKVKARMMMSEFANADRANARNREIEITKTLGQRDWMQVFVGSAAMIIGIVMVVWAKTGVQDKEIFFHILGFAEGTLVGQVVNYYFGASKK* |
JGI26115J46592_100005620 | F023580 | AGG | MNNIKLFLIRNYGSTFNAAQTLDVTPNTVRNWCGRMPRNILKHLPEISESCGATYAEIVEEVLLCEREGIE* |
JGI26115J46592_100005636 | F026567 | N/A | MKAIKILFLVVLAIVAIPVGIVYSVGESLFFIASDVLRSIWRAIYDFFRDVSIIVSVTASKFLNRLLMDSGVPFGNHSVSAVLGANQRERTLTGLGLWLTLLLDSIEKNHCRKASERAGI |
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