NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI26115J46592_1000525

Scaffold JGI26115J46592_1000525


Overview

Basic Information
Taxon OID3300003268 Open in IMG/M
Scaffold IDJGI26115J46592_1000525 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_07_M0_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7670
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameMonterey Bay, California, USA
CoordinatesLat. (o)36.25Long. (o)-122.2099Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F077808Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
JGI26115J46592_10005258F077808N/AMSRQFTWWRRFHGVVKLPKKYLFKGASELQQRIEFGEYEFNHLGREVYLEESIYEAKVEAIKKESPWLNGETLIEAIDYDRKQYNKRKAIMMKNHLETEQKLLWKLAEDLAKEFDMTKEEVSDIMEIFDGSTRDLYFKCKSIALGKKFDPEKMQRFVNEQPRHILKPKERKYIKLWTKLIKEHNWKRYLNWEQLNNS*
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