NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25908J49247_10000007

Scaffold JGI25908J49247_10000007


Overview

Basic Information
Taxon OID3300003277 Open in IMG/M
Scaffold IDJGI25908J49247_10000007 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)68979
Total Scaffold Genes93 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)70 (75.27%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009332Metagenome / Metatranscriptome319Y
F011221Metagenome / Metatranscriptome293Y
F048989Metagenome / Metatranscriptome147Y

Sequences

Protein IDFamilyRBSSequence
JGI25908J49247_1000000721F009332N/AMFKWLIFGIILSGAVFAQSVTMQKSVECTDTETLFRGLIGSDYKEKPIWLGIESGDKVSKYTLFVNEETKSWTLIQFNEKIACVLGTGENSTPLFNGPKI*
JGI25908J49247_1000000725F048989GAGMKNDLKEFEGVHVPSIKDFWSWVGKAFTPSYQKEIDMYLKDSVDHKDLETRMTILMRRGLL*
JGI25908J49247_1000000727F011221AGGAGMFYANMAIDSIQDAKINFLKQTVKEESLRKPLVDFVEAQRVFTKQVAKTSTDVMNIASETVANTISGIANKKGE*
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