NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25908J49247_10000026

Scaffold JGI25908J49247_10000026


Overview

Basic Information
Taxon OID3300003277 Open in IMG/M
Scaffold IDJGI25908J49247_10000026 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36212
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (68.09%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004405Metagenome / Metatranscriptome439Y
F016958Metagenome / Metatranscriptome243Y
F040535Metagenome / Metatranscriptome161Y
F049497Metagenome / Metatranscriptome146Y

Sequences

Protein IDFamilyRBSSequence
JGI25908J49247_100000263F040535AGGMLTLNYTVSKEDTILTTSDRLMINERQINDLMDSLVAYGFTVEAMSVAPATL*
JGI25908J49247_1000002631F049497GGAVATTNKDFVVKTGLKVATGVTFPDNSVQTTAFTGNALTVGSTFPVSPSNGNLFLYTETNRVYYYYNSEWYALANFDDTATVQEHTHDTSIGGGGFVDDIYQYAGDGVAGPWLGTSLDGGTPATTSFAFVIDGGAVA*
JGI25908J49247_1000002641F004405GGAGMAICEDTDFMFPMKADVYYPIITQGDYGQPKKDWVFDKTISCNATPIGGAGSENIKPETFLQYENKLVARTKSDPRISSQQQGNAITNILVTNIRHSNDELVYRETAGVRAGRATIFEVGTVEPFSGPFNKVEYYKMLWRRAENQTVGD*
JGI25908J49247_100000265F016958AGGMKITITSMSGKEMKMDLPTKENVYYFIDLYKKSLKKNQRVKITCDLLGIDGYLQGTASSK
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Institute for Fundamental Biomedical Research
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