NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25908J49247_10000306

Scaffold JGI25908J49247_10000306


Overview

Basic Information
Taxon OID3300003277 Open in IMG/M
Scaffold IDJGI25908J49247_10000306 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14701
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (79.49%)
Novel Protein Genes12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Associated Families12

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000684Metagenome / Metatranscriptome938Y
F000808Metagenome / Metatranscriptome882Y
F003393Metagenome / Metatranscriptome489Y
F004132Metagenome / Metatranscriptome451Y
F005348Metagenome / Metatranscriptome403Y
F012455Metagenome / Metatranscriptome280Y
F014849Metagenome / Metatranscriptome259Y
F015434Metagenome / Metatranscriptome254Y
F023275Metagenome / Metatranscriptome210Y
F034574Metagenome / Metatranscriptome174Y
F047494Metagenome149Y
F100416Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
JGI25908J49247_100003061F004132AGGAMSEAMLQEQLSVPYNPNLLVTYKAIPDTYAAPESPTFMTDKVTQIEWDLHVGRTNAGIAANRSRDIAWLEDQIPEWYDPNYSKEEVLKALAHRFEINPMKQMSVYGTVTFSGTISIPLDEIEDFDLSSVTIDAEVSSYDYEADLTVDDVSLEEN*
JGI25908J49247_1000030610F014849GGAVLTNLDLLAIIIALSGSMLVMFLFYKQNVAQDKEIRRLRNELRKALKV*
JGI25908J49247_1000030612F005348AGGMISSVMTFLCDECNGAGYIFWGDNLDYDVEKCECKNFALGTLFTTKEND*
JGI25908J49247_1000030617F012455GGAMFNEIKNKIIRIQELRRSNAATPIPNKKKYSRKVKHKNAK*
JGI25908J49247_1000030618F047494AGGAMNSLKNKVCKHTANVLAISIVNDMKYTFCENCEQNIYSHYIEDNDIMSYWSSWKVGK*
JGI25908J49247_100003062F000684AGGAMTLGGYTYQIGDLFTTSRTGITGRIVKFAPINSKLTRVSLQLANGAQRLAMVSTTK*
JGI25908J49247_1000030621F034574AGGAGMKITYTIWQGSLNKGLLTAESMKEIIATMKDLNEGNTSSLKFEHMVHKIEQVA*
JGI25908J49247_1000030624F023275N/AMAILDNLEASMADDDGMPSQKVTDAIKEMLEDPEHHKLMERLKYMEDHGI*
JGI25908J49247_1000030625F015434GGAGGMESEINVPPYRHTPKGMSILNKKTKCCDACECGQSEEEKFNKLMETQSSFEE*
JGI25908J49247_100003066F003393GAGGMIDLENDDTIQIVDYVKVDILTAGQLMVDDCILIGDEVVSIADIVSLPDGYTLEVVNDFGERETIQVGEYDQFDLMMLQ*
JGI25908J49247_100003068F000808GGAMDNEYNYSLTTSYDGKLIHTLRVSDMLEAVNAWTKCVDYGFAKEYATYNLSDPTGKMYTKTFYTNGEVVIK*
JGI25908J49247_100003069F100416AGAAGGMGKVKEALMDILEHEYCYGYGWIYQGNNVDFDSEPCECNPHAISADELMDWKLN*
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