NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25908J49247_10000484

Scaffold JGI25908J49247_10000484


Overview

Basic Information
Taxon OID3300003277 Open in IMG/M
Scaffold IDJGI25908J49247_10000484 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12155
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (83.33%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Associated Families9

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000857Metagenome / Metatranscriptome858Y
F001059Metagenome / Metatranscriptome790Y
F001915Metagenome / Metatranscriptome617Y
F003521Metagenome / Metatranscriptome481Y
F004695Metagenome427Y
F006264Metagenome / Metatranscriptome377Y
F015330Metagenome / Metatranscriptome255Y
F015866Metagenome251Y
F027490Metagenome / Metatranscriptome194Y

Sequences

Protein IDFamilyRBSSequence
JGI25908J49247_1000048410F001059AGGAMATYDIASLKEDLPTAKELAQFVYDKVNISLDLIGKPKEEQYTVAKNALEGKKIPSEYLTDDNPWVDKKDIIPEDPLRVLPKRNPDLPDPEAQVHYFGATNMPHPLDPQSDKKVYIDFRKYENGLITYQITGPVEQIPVGEKTNKYGQKVPEKYSWIDPRTEERILRNPDGTYTKEGRGVHTFLIGEKGGGVWTLIDRDIVSISAKNIADPWA*
JGI25908J49247_1000048411F006264N/AMEDPSKIFQNRLSSQAEACARKTLEWLQKDLQGTHKLEPDEVYYLAYAAQILLNIRDNYGKK*
JGI25908J49247_1000048413F004695AGGAMLDKQNVIVENLASSSGNRGLTEQVCHEVYVKMVDYLRLTQSKNTYNRFTDYHYLNIPVSNSTEPIRGIDYIQPIVAPGIDYATAVITKCLMPNGKINFEFERFSEADGDQARQATEMVKYMLNSKNDSYQVIRDWAQDSLLHKNGIVMVSPLRSPITQYKEVEGTRDQLRVFETLAGEKGLTAKRQNMRKVDVNLEGAMQEAMAPDETEAVQEPTDDEIQEALRNNTIYRAKYKLTGYETSIRVKHVAQHYFVCNPTISTIQDQDFVGFYDPMTIHECKSQFPFVDLELLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASQGADRYSRVIMLTTAWIRRDIDGDGEEEIVECCFSGSYILYAKEVDFIPLANMCPKPITGNFFGYSLGERLVPLQEYATAIRRAEMSFAMQSSTPRIGVNPEFLDAEEIQRGVSAMFILDRKFDPTKHIFEFQPMQGNLAYVESAMNRFESDKMAMIGMTSPSDTLNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDVIYITWKTLVQYSDDYNIQQLAGTCLKGAPFMDAMSIENFEFIDRKMINIDLALGFLSEENRLTRQQMILQAQQQFAQAMMMIPPEVPEMFIXVRRPFEDTLRVLGVKDVDAYLPTMDEAVKIIQAQSSKGPSAEQQETQSKVEXNKAKTQESATVSALNMKKAEDIDMDNYFEGLAAKRGKLTAVQVD*
JGI25908J49247_1000048414F003521AGGAMKSLVSNIRDYFNRRTKVIDTYKEANVNRKALVIENGESAKRLLRNDDFALLFNLYRFYLLEMXEESKDDVNRIDNAQRVAGVRDFIEFIERTEYLAKVANKNVETLTK*
JGI25908J49247_1000048417F000857GGAGMELNLNNEEAKVNEDYYTGGVLAGGLEGALIKNDKMFNEVKSGTWSQTFSTPNMNYKVGAIDGERYVQYEQKNVESVREYCKERREFYKMMGTTDNPIFAGTFEAMNLPKCFAHEISGKWFNNRPWDLIKQDKKDKILFYAIVNQFYSDFVCHPSGKIPLPYNPMSRPNKDVLWLFSSNPVTL*
JGI25908J49247_100004842F015866GAGGMFKAKLDSYNFTFEAYHENEILAKEHLKLGLNNHAKQYDLPLDWWHDLGGDIYTVEINLGTPSFNSCYRDNELIKVK*
JGI25908J49247_100004844F001915AGGAMEWTLAHPLHDVDDIVDMADSIFGHEADGILTRDKTVFRKHVTVATTVQVFDKSKEFIAVCRGNKLVKTFIGDAAEDALLGYCWFDRGGYTTYANEEISNAKFHHVDLQLSPRLRVRLINEMIDQHILWANRWGIPVVCSTSIRTEHDGFMKIHKKRGFTVNGSYAWIRTEKGMQCLTK*
JGI25908J49247_100004846F015330GGAMTNFTPRSQKATGGRPKSIVNKVTEYGALFNKLNDERTSRGLPPLKTAMEVLIDAMQSDELDIKDKAKIADKLAPFESSRAPIISVEHIQNVTREDEGDADDALNEFMESLRKV*
JGI25908J49247_100004848F027490GAGMSYGTVINGGAQMRKGVTKNINDKLSTRSAEDDRRATVAGAVNSAYKVNTISSQHTNNTKGGSFTKPSNRSKDYAA*
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