Scaffold JGI25908J49247

Basic Information
Taxon OID	3300003277 Open in IMG/M
Scaffold ID	JGI25908J49247_10000816 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003277 Open in IMG/M

Scaffold ID

JGI25908J49247_10000816 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9702
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (91.67%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

9702

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (91.67%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (87.50%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Michigan, USA
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Michigan, USA

Coordinates

Lat. (^o)

43.1998

Long. (^o)

-86.5698

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F001059	Metagenome / Metatranscriptome	790	Y
F001915	Metagenome / Metatranscriptome	617	Y
F003521	Metagenome / Metatranscriptome	481	Y
F004695	Metagenome	427	Y
F006264	Metagenome / Metatranscriptome	377	Y
F027490	Metagenome / Metatranscriptome	194	Y
F098944	Metagenome	103	N

Family

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_100008161	F000857	GGAG	MELNLNNEEAKVSEDYYTKGILEAGMEGALIKNDKMFNEVKSGTWSQTFNTSNMNYKVGAIDGERYVQYEQKNVENIKLYCKERREFYKMIGTTDNPMFAGTFEAMNLPKCFAHEISGKWFNNRPWELIKMDKKDKILFYAIVNQFYSDFVCHPSGKIPLPYNPIVPTK*
JGI25908J49247_1000081611	F098944	AGG	MFEEIRPEGSTVTSEEIKQRARDYAKAKRAQKKAMKLATGQIEPKAIETFPVVDEFDMSTFVPRSQKAAGGRPKSIVNKVTEYGALFNKLNDERTSRGLPPLKTAMEVLIDAMQSDELDIKDKAKIADKLAPFESSRAPIISVEHIQNVTREDEGDADDALNDFMESLRKV*
JGI25908J49247_1000081612	F001915	GGA	MEWTLAHPLHDVDDIVSMADSVFGHEADGILTRDKAVFRKHVTIATTVQVFDKSKEFIAVCRGHRKFDTYLGPAETQDELLGYCWFDRGGYTTYANEEISNAKFHHVDIKLSPRLRVXLINEMIDQHILWAYQWGIPVVCSTSIRAEHDGFMKIHKKRGFTVHGSYAWLRTEKGMECLKK
JGI25908J49247_100008164	F003521	AGGA	MKSLVSNIRDYFNRRTKVIDSHKESHVNRKTLVIENGESAQKLLRNDDFALLFNLYRFYLLEMLEESKDDVNRIDNAQRVAGVRDFIEFIERTEYLGKVANKNVETLTK*
JGI25908J49247_100008165	F004695	AGGA	MLDKQNVIVENLASSSGNRGLTEQVCHEVYVKMVDYLRLTQSKNTYNRFTDYHYLNIPVSNSTEPIRGIDYIQPIVAPGIDYATAVITKCLMPNGKINFEFERFSEMDGDQARQATEMVKYMLNSKNDSYQVIRDWAQDSLLHKNGIVMVSPVRSPITQYKEVEGTRDQLRTFETLAGDKGLTAKRQNMRKIDVDLQGAMQEAMAPDETEAMQEPTGDELQEALRNNTIYRAKYKLTGYETSIRVKHVAQHYFVCNPTINTIQDQDFVGFYDPMTIHECKAQFPFVDLELLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASQGADRYSRVIMLTTAWIRRDIDNDGEEEIVECCFSGSYILYAKEVDFIPLANMCPKPITGNFFGYSLGERLVPLQEYATAIRRAEMSFAMQSSTPRIGVNPEFLDAEEIQRGVSAMFILDRKFDPTKHIFEFQPMQGNLAYVESAMNRFESDKMAMIGMTSPSDTLNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDVIYITWKTLIQYSDDYNIQQLAGTCLKGAPFMDALSIENFEFIDRKMINIDLALGFLSEENRLTRQQMILQAQQQFAQAMMQIPPEVPEMFIKVRRPFEDTLRVLGVKDVDAYLPTMEEAVKIMQAQASKGPSAEQQETQSKVALNNAKVEESGSVTALNIKKAQDIDTDDMFEALAAKRGKLSSVQVD*
JGI25908J49247_100008167	F006264	N/A	MEDPSNIFQNKLSSQAEVCARKTLEWLQKDLQGSHKLEPDEIYYLAYAAQILLTIRDNYGKK*
JGI25908J49247_100008168	F001059	AGGA	MATYDIDSLKEDLPTAKELAQFVYDKTGVSLDLLGKKKEEQYIVAKNALEGKKIPSEYATDDNPYVDKKDQIPCDPVRPLPKRSVDLPDEGSLVHFFGATNMPHPLDPQSDKKVGINFKKYDNGCITYQVMGPLEQIPVGQKVNKYGQTIPEKYSWIDPRTEELLMRRPDGTFTEKGRGLYSYLVGEKGGGVWSLIDRNITSISQKNIADPWA*
JGI25908J49247_100008169	F027490	GAG	MSYGTVINGGAQMRKGVSKGINDKLAGHAAENGRRDQVAKAVGNAYTVNTVSSQHTNGVKNSGKFTKPSNTSKNYAL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI25908J49247_10000816

Overview

Ecosystem & Geography

Associated Families

Sequences