Scaffold JGI25908J49247

Basic Information
Taxon OID	3300003277 Open in IMG/M
Scaffold ID	JGI25908J49247_10000921 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003277 Open in IMG/M

Scaffold ID

JGI25908J49247_10000921 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9227
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (60.87%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

9227

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (60.87%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (62.50%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Michigan, USA
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Michigan, USA

Coordinates

Lat. (^o)

43.1998

Long. (^o)

-86.5698

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009749	Metagenome / Metatranscriptome	313	Y
F012868	Metagenome / Metatranscriptome	276	Y
F019433	Metagenome	229	Y
F023522	Metagenome	209	Y
F024537	Metagenome / Metatranscriptome	205	Y
F048947	Metagenome	147	Y
F064668	Metagenome / Metatranscriptome	128	N
F100345	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_100009211	F009749	N/A	MYSWILIVAMYSPAGDFIGKDTMKFESQKACEAVKVQLPNLDHLMRVKHKGLCVTRDHWEGKKQMPGVAYD*
JGI25908J49247_1000092116	F100345	AGGAG	MSEHQRLVALLKGPDWYAHESGKDLLAVLNQGKRKRYKSMNSTADKHLSTIMYLFDKEQSVRILKTWLSTYSLPLDPDRLKTFDQFHEQFGKFITNNAGLIKSY*
JGI25908J49247_1000092117	F064668	AGTAG	MNITVYSRNRLYETFSKWDVPRDFADPMANYLVYGYEPGGFFTALLANDFFAAIQSSHPXNTVEALKCLVGWINDCMPPEAYSTYNRVSEWCRLPEGHRRAILEQYGLIHTEQEEIMLTLRSESTVEPVLY*
JGI25908J49247_1000092120	F012868	GAG	MKHYDYEWDLNPGGIILDPELNIDKLGWRHGDMFKVTNIDGRAMLVKLDPLVKFIEEGLRNETSNLE*
JGI25908J49247_100009213	F023522	GAGG	VIDPNPTPTILRAQRAEEHLKVDQRLMQLLDTYHVIVLRDEDFAEKLTWCLENCQSKFRDLSDPNGRAWYFQNEQDATMFAMKWA*
JGI25908J49247_100009215	F048947	AGG	MNSSQRRRGRREFRKLEHSILIDAKKYRDAGAWCLTQFGKRWQAIGDTDGAWTMFWAGRNDHDKYIFHFVEEQDKLMFILKWS*
JGI25908J49247_100009216	F024537	N/A	MKNLEKEILDELGTKMQSEIDREVMWGMLKSLGWRRVNLDRFTDXNHAVDITYWLAEHCKHAFERRGADFIFESEVDAVNFTLRWQ*
JGI25908J49247_100009218	F019433	N/A	MVTDKIKIGSLNEILATRVRTVYPYRVNFDNITRNQIEEMASWCINNCKDLWREEHYHALYFQFTDDYDAMMFMLKFGGRGNV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI25908J49247_10000921

Overview

Ecosystem & Geography

Associated Families

Sequences