Scaffold JGI25908J49247

Basic Information
Taxon OID	3300003277 Open in IMG/M
Scaffold ID	JGI25908J49247_10003027 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003277 Open in IMG/M

Scaffold ID

JGI25908J49247_10003027 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5361
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (80.00%)
Novel Protein Genes	11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	9 (81.82%)
Associated Families	11

Scaffold Components

Scaffold Length (bps)

5361

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (80.00%)

Novel Protein Genes

11 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

9 (81.82%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Michigan, USA
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Michigan, USA

Coordinates

Lat. (^o)

43.1998

Long. (^o)

-86.5698

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004583	Metagenome / Metatranscriptome	432	Y
F006220	Metagenome	378	Y
F007310	Metagenome	353	Y
F008494	Metagenome / Metatranscriptome	332	N
F009750	Metagenome	313	Y
F010398	Metagenome	304	Y
F011760	Metagenome	287	Y
F013084	Metagenome	274	Y
F018927	Metagenome	232	Y
F071169	Metagenome	122	N
F076096	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_100030271	F009750	GAG	MILKNAIFEPSHTMKEIVTAIYQNGEFTDNNILKPHLTDRIGIRMKFPEGAGCILWTNGKKYYAVCEAFGTVFTINIPRNIGDDIWDRFKTYYEGNYSYKPF*
JGI25908J49247_1000302710	F006220	GAGG	MKKFKKFIEELAIASGTEMMRASQMRPSTFKDKSKYSRKQKHKKGSENE*
JGI25908J49247_1000302711	F071169	AGG	MSSIEVQVNVEELDVVRRKLSFQLNKDLTSEETVKFLIEREFNIAKKIPLAKKSPNRAEKSDIKECIYNGSTSGEAMKKLNVSRSTFFRHKAKERKLLEESE*
JGI25908J49247_1000302714	F076096	AGG	MVCYNTEWENPLYWFDKLLTYTEHAELRMIERDLPLVDFLPLXSKFLYRTLKRDVYSMTFETVVNHKRMEIAINSLGYVMTVYPVLITKADKFQYKYKQYLGAFKQPDDYCPPVISDFNFLEGTI*
JGI25908J49247_1000302715	F004583	AGGAGG	MKTTRNSYRLREILFCTRNQIVSLKDIQMDMLRIDSKVANQIATQISALEEVYKHQLSLVTQAESVEPKRDGWF
JGI25908J49247_100030272	F008494	AGGAG	MTKKEVINLFMSAVGQYTSAIDKTAESNIQFKKSVYALEDAVNLIYRNVDAKELGSNAEARNAKVSEKTQDLIVAKREAEYLLETARANESRIKAEVDQMKYIIRALEAKEEA*
JGI25908J49247_100030273	F010398	AGGAG	MEISIQGVTKVNYELVIDEDVFNEACEEAGLDPANFKKFTKDDWDELNPHLVQAVVDNESDIDYTEIHVETSVFADTLTIDDSDNVTTVYYDKNRKADSVEIQ*
JGI25908J49247_100030274	F011760	GGA	MRVRLEDVSDRSSCIGYVGQGTWFDGKSFIVTQYKANPSSFYFFVYNDFVPDYNYFNSMNSGFGNEIYQLNPDNGNFSGKTYIYSSKLDKMFEPYAITPVVESPTFLFEIR*
JGI25908J49247_100030277	F018927	GAG	MYTHIVISRHLAVDGTTTFYVIEKSKNSSSIIWNGTNKQAAYQVAYRNARKENLPLYDTQYRPEVDKNGVKHIIPIGNELLEVNN*
JGI25908J49247_100030278	F013084	N/A	MGIMNALELMAEAKETAIYRGHNVKYWNVLGGDCYSLECKDCKMSVMVKENPLPNEINVGGEAVALNCVKPVKEKKLRKK*
JGI25908J49247_100030279	F007310	N/A	MRTVLWNNTERWFNHHHYELLIEDVTGFDLKKSLCEESVKYMAKRLSETKYQRRFKTLYTIYENEYNALVEKFNNQAENNGNIEVA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI25908J49247_10003027

Overview

Ecosystem & Geography

Associated Families

Sequences