Scaffold JGI25908J49247

Basic Information
Taxon OID	3300003277 Open in IMG/M
Scaffold ID	JGI25908J49247_10003962 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003277 Open in IMG/M

Scaffold ID

JGI25908J49247_10003962 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4728
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (10.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

4728

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (10.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Michigan, USA
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Michigan, USA

Coordinates

Lat. (^o)

43.1998

Long. (^o)

-86.5698

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F007690	Metagenome	346	Y
F019478	Metagenome	229	Y
F041776	Metagenome	159	N
F084228	Metagenome	112	Y
F085695	Metagenome	111	N
F098656	Metagenome / Metatranscriptome	103	N

Family

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_100039622	F007690	N/A	MLTIENIDKLVNQPIWDGWEVNDIYKGGHNDTYIFELVKRKPLPMHNGLCTIMLERTGHTLPNKSNLVYFFIYNSQRTDICASADWLADKDNMIAKLEYILVNKENL*
JGI25908J49247_100039623	F084228	N/A	MLTIENITKLENRKLIGGWVISDMNCHPTRKKYIFDIHCMGPIGNRIDRCTISLNRIGELQRNMFKPDTTAYFFNYNGERTDVCVTGEWIKNPENFISQLKYIINEYHNKQ*
JGI25908J49247_100039624	F019478	AGG	MVLKIINENKMVGTVYWNRRFKCLQVHETDTNYRFQFDDVQIPNKYVWVEVRKDGHYNQEHQVWEYRLNYMKCPGHVITAKWFEDYKNVIDTFGTALKNSM*
JGI25908J49247_100039625	F085695	N/A	MSIMRTKGMGKVVLSATPKGVHNFKDLYTMNKKLTIQNYNKDLNKGIIYGWDIISADETEDSYLFQLRYRTDNTLRVYVTLGRELQYSELPYYPEMMYQCYIHDDAGKWSNRSWFRVHDITYKNFWELIEETITNHHLPF*
JGI25908J49247_100039626	F041776	N/A	MLKIENFNKIRNQWYGDWQIGKTDEGNSYYALNARHKDGKRSITVIIYKQDKLDTEFAETAYNISLMDDSIGSSSIIDDIIYKAVLEDMELFGEALVHYLNTI*
JGI25908J49247_100039627	F098656	N/A	MKKQKEEGAIITANESVSIVMKSRYEHGEEWQDYISDKFEGVGIPPVFNKINDGLSDRIADYQYEGNWIEAKTFINSAEVTKILKLYSTLESMNIRMVVMCEWEPGSKKHAKNVADLRRLGVIVFEGQSECDSFIINESVILNPDKTINMAVPMCIPFDRIVPHPNNRDLNVKNIPTIKASITKNGFFTQLNVVPMGIEDKKKRNIPLEEDWYMIFEGHTRFYALKDLIEKGYNVPDIACIVVPWISSDNIDLLHKILITTNTTYQSWKLKNFITSHKGNLEQLGDVDGIYAYGKMLQAMNQAKKQGWGEANPIYMFCHTDSLAFDDMKKVKDGEYRITESEYNSQIKPILDFMKKLTSDNRKFNGTIMRDIIVDIRIMYNTNPSVKDRFHQFLPWLAMKFIGDYSIDKFPLTKETGVDYWKVIKKEYLYMIENGMIPVQPMVPEKTLMDFA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI25908J49247_10003962

Overview

Ecosystem & Geography

Associated Families

Sequences