Scaffold JGI25908J49247

Basic Information
Taxon OID	3300003277 Open in IMG/M
Scaffold ID	JGI25908J49247_10006135 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003277 Open in IMG/M

Scaffold ID

JGI25908J49247_10006135 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3835
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (90.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

3835

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (90.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Michigan, USA
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Michigan, USA

Coordinates

Lat. (^o)

43.1998

Long. (^o)

-86.5698

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000311	Metagenome / Metatranscriptome	1326	Y
F000450	Metagenome / Metatranscriptome	1126	Y
F000980	Metagenome / Metatranscriptome	814	Y
F001460	Metagenome / Metatranscriptome	690	Y
F007470	Metagenome / Metatranscriptome	350	Y
F037727	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_100061351	F000980	N/A	MTTYNKYTWVCTGDCDALIEYTYKDGFGWPNGVMQLTCPCNSTCTLLSVEDVTIPYTDTPLLTKEEPMEETTYGATVTPVVPESYNANLLVTYKVIHGYSDAEYATDKVASIEWSLHNGRQAQKQANMYVSKIDTVKDIITEAYADSDDQETLRAIAEALDIXXTRTVEWXASIEVSGTIELDLLAGYDTDIESEITDAIYAESQNGNIEITDQEVCNVSEC*
JGI25908J49247_1000613510	F000263	AGG	METLYKDDELPSHLQRLVDAGVNGLDIMHGELKNLMLIAEEQLSWAIDIEKETEEAMDSMSRTECEGRLDTLVELYKLTYDLSFAIGARDEASR*
JGI25908J49247_100061352	F000311	GAG	MYFELTAPDRLSLEMAYWDAQITGLDPEFMPPLTFNVGTGSIEKVSRIRDKYNLKESYWSDKESTGY*
JGI25908J49247_100061353	F007470	AGGAG	MDYKDGFEDGVKFAREVIILNLRSWAETTADDGQVMDDIADRLEFGKVDYDL*
JGI25908J49247_100061355	F000450	AGGCGG	MGDRANFGFVQPNGHTIVLYGHWAGHNMLANLAEAVFKARPRWNDASYATRIAISQMVADDWNSETGWGLSVNLINDNEHKIAIVDFKQQTFSLHEEAPHNDLDNKVRGMSNEPIFTMDLSNFVEKYADVIVAV*
JGI25908J49247_100061358	F001460	GAG	MLGYTESDLNRMINAVHDSKLFYLRTPSDLMDKTELRTXLEMAVSFLQGLWAEGYFDNAQI*
JGI25908J49247_100061359	F037727	AGAAGG	MHKSSKFLEYIKLHRISLIQDNENLIQDTNAPDWNFLQGQIIATEHLLSVATDIMNENERV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI25908J49247_10006135

Overview

Ecosystem & Geography

Associated Families

Sequences