Scaffold JGI25908J49247

Basic Information
Taxon OID	3300003277 Open in IMG/M
Scaffold ID	JGI25908J49247_10007989 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003277 Open in IMG/M

Scaffold ID

JGI25908J49247_10007989 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3336
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

3336

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Falkowbacteria → Candidatus Falkowbacteria bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Falkowbacteria → Candidatus Falkowbacteria bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Michigan, USA
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Michigan, USA

Coordinates

Lat. (^o)

43.1998

Long. (^o)

-86.5698

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005775	Metagenome	390	N
F008615	Metagenome / Metatranscriptome	330	N
F016114	Metagenome / Metatranscriptome	249	Y
F025444	Metagenome	201	N
F042709	Metagenome / Metatranscriptome	157	N
F094995	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_100079891	F008615	N/A	MNTHNTFGAKMFGRFIKKGWHISFTDSYQDRVCVIPPDRLNAQHVFGIYIPVMRHTWQPDLKREWWAALQTKDCMLGPKFEATAHPDDIERFAAFAAWIGDLLRNPEKFT*
JGI25908J49247_100079893	F016114	N/A	MLKVKKYWAAAFFDSRDTEVINEMAAMARRMLICQGELQRDELARIKMKYPHLTTKD*
JGI25908J49247_100079894	F005775	AGGA	MAKERPIYTKAQHQIITPAFVEKKIQMHKTVKWTTKDDRELFIMASASVTRYVPGSKHNTQAPMGFFNLQMGHYNKISIHSRDFEQLADVFEQITLFLRNNANKLDQVVTKELDTYTSHHLTNLLNNEAKP*
JGI25908J49247_100079895	F094995	N/A	MVLKEKYTTLQRTLDCMQTQIEESLSFARNFVPRGETPRSLFALLKQHTTYRHDPPGVELLQSMPTLMHRNFYGIPGAGDCDCFVIAAVSSCVVEKIPVRIVVVGNTRKNPTHVYAEVMDGGRWTAFDLCSPFYGETKKYRYLSRIKVN*
JGI25908J49247_100079896	F025444	N/A	MYLQLAGLEPLDTALNPLAPGAPTYKYDQMYLGQSQDIILPDALFPANVEGYAQAIKSLTGLYDKYAKGLLTPAQKVKTKGLAVIDPGTLKLIATAVYQGIQALSVVFRGQVVTAARQRITELYNGNNFNVQNLNKLTARQISDQITAIDSQINMTPRTQFGRQMALARFRLIYQQRFDQVAGGGGIGNLPGWVLPAALGLGAFLLLRGRR*
JGI25908J49247_100079897	F042709	GAGG	MNPLVIFGAVALFFLLRKKPPVVVDNTTPDVVPFTAANVNAYKNLNTTSTFDNRLAKEARRVTPDGTGKNIVDGSYKCFAPGNQTRRNEIIKVYEDLDRLQTRINNSTGERREEARKDRREKDDQRAILVAEHYMICEAFFEELKKKAATPQQTVITTAPQAQQTRTSL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI25908J49247_10007989

Overview

Ecosystem & Geography

Associated Families

Sequences