Scaffold JGI25908J49247_10009054

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI25908J49247_10009054

Scaffold JGI25908J49247_10009054

Overview

Basic Information
Taxon OID	3300003277 Open in IMG/M
Scaffold ID	JGI25908J49247_10009054 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3127
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Michigan, USA
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002707	Metagenome	535	Y
F010837	Metagenome	298	Y
F015866	Metagenome	251	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_100090543	F002707	GGAG	MTQIDALTQCLVLAITAPTDEKANQASQLAEQIAQGLTKKQVNQCKQAAIKLWGEA*
JGI25908J49247_100090544	F015866	AGG	MKFYKAILDSRRFHFEAYAINETLAKEHLKKGLNNHAKDYQMPLDWWHEYGGDIYVVEIEIGRPDFNSCYRDNHLIMEKK*
JGI25908J49247_100090548	F010837	AGG	MGRPSNPQTRYFQRTLSDPQRMILLAAGNGNLCRGFENVLDLYLEAHNQGFRPNMPLSFLNIGRATTNNPNSEESVGDKVRETPREE*

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