NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25908J49247_10011168

Scaffold JGI25908J49247_10011168


Overview

Basic Information
Taxon OID3300003277 Open in IMG/M
Scaffold IDJGI25908J49247_10011168 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2786
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004450Metagenome437Y
F011669Metagenome288Y
F018719Metagenome233Y
F020323Metagenome224Y

Sequences

Protein IDFamilyRBSSequence
JGI25908J49247_100111682F018719AGAAGMTPTFATWDRATLDQFAMDAYLRMQQQQDQLEQLRADLKDAIEAYRALNKGSSS*
JGI25908J49247_100111686F011669GGAMNDDDDYELANWMYAIATVILGLFALVGVAGLAGFIWGML*
JGI25908J49247_100111687F004450GGCGGMNWVAAALVALVMSTAYLLDGPSEHEAQVDTVEEKIQRMCGENAAWKMLADGSVQCFTHRGFKTRKVTL*
JGI25908J49247_100111689F020323GGAGGVTRLTQLRARLKAAQAELLIRTRTHNSASRAYNEVVARIAELEKRIDNLAKISK*

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