NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25908J49247_10012675

Scaffold JGI25908J49247_10012675


Overview

Basic Information
Taxon OID3300003277 Open in IMG/M
Scaffold IDJGI25908J49247_10012675 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2598
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007163Metagenome / Metatranscriptome356Y
F011276Metagenome292Y
F037029Metagenome168Y
F091317Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
JGI25908J49247_100126751F007163GGAMTLEDLEYIFEYQIEEGTENLYFMLTDGDRHPVIQRHPADDLAGLLPMLDSFQYTGHNVMPRFKK*
JGI25908J49247_100126752F091317GAGGMKVDRIDPAVAHNIELAKLTQQQTIKQQQLKVITDRQEEIKQMRPKDPGKGANIDEMV*
JGI25908J49247_100126753F011276GAGMIKGLMGTCGVTVSGGDTSLPYVSANPSNPVQGMIRINNTDLEVFNGTGWQSLPSSYATVSLDQDTQDLLQWARAQRTMAMNRLTLAQNNPALMKALEKLKKAEDDFELLARFVEHDKLSA*
JGI25908J49247_100126755F037029AGGAGMNFRTWCREKWFEHKDELEAYGQTPSYTADGYFQMYKYWLKREYRHQQRNV*
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