NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25908J49247_10024401

Scaffold JGI25908J49247_10024401


Overview

Basic Information
Taxon OID3300003277 Open in IMG/M
Scaffold IDJGI25908J49247_10024401 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1772
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010236Metagenome / Metatranscriptome306Y
F024783Metagenome204Y
F036672Metagenome / Metatranscriptome169N

Sequences

Protein IDFamilyRBSSequence
JGI25908J49247_100244012F036672AGGAMKIWGEFHALLWTIAASVTTILTLSGAIQKVVIWLTVGALVLHLIGALTKKEESE*
JGI25908J49247_100244013F010236AGAAGMKKFQDVAGRIVAVFMSSALAIVGGSALIAPELEIWKSACLAGFAACATVIQKLAQASLDGNLTMEEINDAFGAKKK*
JGI25908J49247_100244015F024783N/AMMDWGIVVAALITAVGGVMTTLMLVMRKENTQDHAKVVDALDVLSGNVTNIGTKLDGHIDWHLKGVPNGKVSSGNQSPRTKRRVKD*
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