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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300003278 Open in IMG/M |
| Scaffold ID | U2draft_1000017 Open in IMG/M |
| Source Dataset Name | Down-flow hanging sponge reactor microbial communities from the University of Illinois at Urbana-Champaign, USA - U2-648F-DHS |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 375930 |
| Total Scaffold Genes | 303 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 55 (18.15%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Down-Flow Hanging Sponge Reactor → Down-Flow Hanging Sponge Reactor Microbial Communities From The University Of Illinois At Urbana-Champaign, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: University of Illionis | |||||||
| Coordinates | Lat. (o) | 40.114056 | Long. (o) | -88.226756 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F054742 | Metagenome | 139 | Y |
| F064866 | Metagenome / Metatranscriptome | 128 | Y |
| F101365 | Metagenome | 102 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| U2draft_1000017135 | F054742 | N/A | MSRKILAVLAVASSIFMLSCERKPYVEHKLKFEKVADDCKEQQAYFRMNSNFGGERYEFEKCLPADFTDEQITSERQGDTVLVRFKTAAVNPANKVYHITLDIDSYPAYHFVTIDGDTYSISAAEK* |
| U2draft_100001769 | F101365 | AGG | MPGSYAPGTINRNFEPVNVTAVPVIADLIYINKLLLELPDFFLDIYGTKLNEYPVQPTTMYLNKHLIYWINRYPKTMDLTLEDLMDALQYKRPGMTLECTRFRGGFEIFIPLEGVTYTNDDGMVRQHYFVINVDSIKNAIRIYVYKEEYLCIDFAQIRENFCDLIQAIKEYMKEHRTVDKLLSKIIS* |
| U2draft_100001770 | F064866 | N/A | MKTSYSTFLLSVCMGALPFVAPAQMNDSHALAKYSYPIFAVADNQQYTGTAFFYRSGDTSFLVSNYHAIKGMSPLKKSITFNADTLFLKYPVKNSREFKIVAINISEEITGKTEIFSMVERIDLLKIPMKTPQDADILFINELIDEDYLNAEPEEVVVFGYPTNPGSVPAFYSRQQRLEGRINPNGFTDYDASLRLNFPATSDDARAILGGTARYYYFIKPYAAQGYSGAPVFGKFRNAENEVIYRFTGVIFAGQPTTRQTWAIKGAVALKYLQSEL* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |