NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0006841J48915_103816

Scaffold Ga0006841J48915_103816


Overview

Basic Information
Taxon OID3300003298 Open in IMG/M
Scaffold IDGa0006841J48915_103816 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 42 (Metagenome Metatranscriptome, Counting Only)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)856
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009513Metagenome / Metatranscriptome316N

Sequences

Protein IDFamilyRBSSequence
Ga0006841J48915_1038161F009513GGAGGMFDMILENYRKATESTMKLQQDVLRNWTMQWPQMFGAQTFGLPFLGGPASGSAMPGAAWLQQLSDAQKKWGETVTDMLNKHRESLDAQYKAGIRTIEEAFKVGEARDPQQLRRLTEELWKHSFECLKTVAEAQTRDIQAAMQKFYEVASKSTSGLKV*
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